Journal club

DatePresenterTitle/ about 15 minutes, < 20 minutes
24-03-20251.YangNSGeneious prime usage
31-03-20252. ChenX1. Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon. Nucleic Acids Res. 2023
2. Casposase structure and the mechanistic link between DNA transposition and spacer acquisition by CRISPR-Cas eLife 9:e50004.
07-04-20253. AddyTransposition of Mutator-like transposable elements (MULEs) resembles hAT and Transib elements and V(D)J recombination-2017-NAR
21-04-20254. WijdanA Naturally Active Spy Transposon Discovered from the Insect Genome of Colletes gigas as a Promising Novel Gene Transfer Tool-2024-ADS
28-04-20255. AhmedCharacterizing Mobile Element Insertions in 5,675 Genomes
6-5-20256. XXxingAll-RNA-mediated targeted gene integration in
mammalian cells with rationally engineered R2 retrotransposons-cell
19-05-20257. XianKLCas9-induced targeted integration of large DNA payloads in primary human T cells via homology-mediated end-joining DNA repair-2024-nbe
2-6-20258. LiMYTransposase-assisted target-site integration for efficient plant genome engineering-2024-nature
9-06-20259. WanQTransposase N-terminal phosphorylation and asymmetric transposon ends inhibit piggyBac transposition in mammalian cells-NAR-2022
16-06-20251. PhiriGenomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color_ A Case Study in Water Buffaloes (Bubalus bubalis)-MBE-2021
23-06-20252. XinChenMegabase-scale human genome rearrangement with
programmable bridge recombinases-2025-preprint
30-06-20253. AddyFunctional characterization of the active Mutator- like transposable element, Muta1 from the mosquito Aedes aegypti-mobile DNA-2017
4. WijdanTransposase expression, element abundance, element size, and DNA repair determine the mobility and heritability of PIF-Pong-Harbinger transposable elements-2023-front-cell-and-biology
5. AhmedAn Alu insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project. NAR Genom Bioinform. 2022
6. XXxing2025-nature-Reprogramming site-specific retrotransposon activity to new DNA sites
7. XianKL
8. LiMY
9. WanQ
10. NSYang
Protein Mutational Effect Predictor (ProMEP)
PPT in English and Chinese, talk less than 15 minutes in Eng.

TnLabDatabase

Database developed by TnLab

pigRIPdb: pig retrotransposon insertion polymorphism database

TnpBMEdb: database of TnpB associated mobile elements

IscBMEdb: database of IscB associated mobile elements

rabbitRIPdb: rabbit retrotransposon insertion polymorphism database

sheepRIPdb: sheep retrotransposon insertion polymorphism database

goatRIPdb: goat retrotransposon insertion polymorphism database

auDNATndb: Autonomous DNA Transposons database (auDNATndb)

Programs developed by TnLab

TypeSINE: program for genotyping SINE RIP in livestock (mammal)

MEboundary: program for automated definition of TnpB and IscB associated mobile elements