AI-Derived engineering
EVOLVEpro: https://github.com/mat10d/EvolvePro
AiCE: High-fitness mutation prediction tool: https://github.com/ScorpioLea/AiCE
Bridge RNA Design Tool: https://arcinstitute.org/tools/bridge
CRISPR
TnpB Editing Efficiency Predictor (TEEP): https://go.tnpb.app/
CRISPR与TnpB双系统的设计平台CRISPy-web
2023: transCRISPR
2018: CRISPOR
2015: CRISPRdirect
2016: CRISP-Ex
2015: CRISPRDB
CRISPR-IDT:https://sg.idtdna.com/site/order/designtool/index/CRISPR_SEQUENCE
Chopchop: http://chopchop.cbu.uib.no/
CCTOP: CCTop – CRISPR/Cas9 target online predictor
e-crispr: https://www.e-crisp.org/index.html
CRISPR-CAS++ (paris-saclay.fr)
CRISPRloci – CRISPR-Cas annotation (uni-freiburg.de)
crisprSQL – CRISPR off-target database
CRISPR RGEN Tools (rgenome.net)
https://benchling.com/pub/c2c2
http://crispresso.pinellolab.org/submission
http://guides.sanjanalab.org/#/
https://www.crisprindelphi.design/
Addgene: CRISPR Plasmids and Resources
TALEN
Tools | TAL Effector Nucleotide Targeter 2.0 (cornell.edu)
SAPTA TAL Targeter | Tools | tDnA (rice.edu)
ZNF
Zinc Finger Tools (scripps.edu)
The Zinc Finger Consortium | Software Tools (zincfingers.org)